April 20, 2016
Introduction
Plant root and nodule metagenomes
Treatments
- conducive / suppressive
- CUR /EST (salt / non-salt)
Sequencing details
- Hiseq / Miseq
- plant
- throughput
| Right | Left | Center | Default |
|---|---|---|---|
| 12 | 12 | 12 | 12 |
| 123 | 123 | 123 | 123 |
| 1 | 1 | 1 | 1 |
Assembly
Diversity plots
- endo vs rhizo
- diversity nodules
Analysis pipeline
- snakemake
- overview
- highlight
Assembly results
- table with mapping/stats
Annotation
pipeline
pictures victorc
Binning
Introduction
GC vs coverage
16S
Colored bins
Tetra nucleotide
Tetra colored
Conclusion
Acknoledgements
Average Genome Size
Gene length
Rhizo vs Endo
- plot diversity
Image test
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Image test2
Slide with centered image and citation
