April 20, 2016
Introduction
Plant root and nodule metagenomes
Treatments
conducive / suppressive
CUR /EST (salt / non-salt)
Sequencing details
Hiseq / Miseq
plant
throughput
Right
Left
Center
Default
12
12
12
12
123
123
123
123
1
1
1
1
Assembly
Diversity plots
endo vs rhizo
diversity nodules
Analysis pipeline
snakemake
overview
highlight
Assembly results
table with mapping/stats
Annotation
pipeline
pictures victorc
Binning
Introduction
GC vs coverage
16S
Colored bins
Tetra nucleotide
Tetra colored
Conclusion
Acknoledgements
Average Genome Size
Gene length
Rhizo vs Endo
plot diversity
Image test
{#id .class width=30px height=2px}
Image test2
Slide with centered image and citation
[@lindquist_wager_2015]