April 20, 2016

Introduction

Plant root and nodule metagenomes


Treatments

  • conducive / suppressive
  • CUR /EST (salt / non-salt)

Sequencing details

  • Hiseq / Miseq
  • plant
  • throughput
Right Left Center Default
12 12 12 12
123 123 123 123
1 1 1 1

Assembly

Diversity plots

  • endo vs rhizo
  • diversity nodules

Analysis pipeline

  • snakemake
  • overview
  • highlight

Assembly results

  • table with mapping/stats

Annotation

pipeline

pictures victorc

Binning

Introduction



GC vs coverage

16S

Colored bins

Tetra nucleotide

Tetra colored

Conclusion

Acknoledgements

Average Genome Size

Gene length

Rhizo vs Endo

  • plot diversity

Image test

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Image test2

Slide with centered image and citation

[@lindquist_wager_2015]